Labs / AI tools

AI tools for neurology.

The tools we build at Neuro.Wiki and NeuroEvidence, and a short list of outside tools we find useful for brain imaging, EEG and the literature. For education and research.

Our tools

Built by Neuro.Wiki and NeuroEvidence

Available now

Brain Mapper

Load a 3-D T1 brain MRI and explore every lobe, gyrus and deep nucleus in three linked planes, with concise clinical notes for each structure.

Map a brain

Available now

Angio Mapper

Drop a cerebral angiogram and see every artery outlined in seconds. Text is removed in your browser first; the image is never stored.

Map an angiogram

Other tools

Useful tools from other teams

Brain MRI segmentation

FreeSurferMartinos Center, Massachusetts General Hospital
The long-standing research suite for cortical surfaces, cortical thickness and brain segmentation on structural MRI.
FastSurferDZNE (German Center for Neurodegenerative Diseases)
Deep-learning brain segmentation and surfaces, compatible with FreeSurfer, in minutes rather than hours.
SynthSegBillot et al., part of FreeSurfer
Segments brain scans of any contrast and resolution, including routine clinical MRI, without retraining.
BrainChopTReNDS Center, open source
Brain extraction and segmentation that runs entirely in the web browser.

Medical imaging AI

TotalSegmentatorWasserthal et al., University Hospital Basel
Segments more than 100 anatomical structures on CT and MRI.
nnU-NetGerman Cancer Research Center (DKFZ)
A self-configuring framework that sets up and trains a segmentation network for a new dataset.
MONAIProject MONAI, open source
A PyTorch framework for building, training and deploying medical-imaging AI.

Image viewers

3D SlicerSlicer community, open source
A free desktop platform to view, segment and measure medical images, with AI extensions.
ITK-SNAPUniversity of Pennsylvania and University of Utah
A lightweight viewer for manual and semi-automatic 3-D segmentation.
NiiVueNiiVue team, open source
A fast web viewer for MRI and CT volumes with overlays, usable in any browser.
MRIcroGLChris Rorden, University of South Carolina
Slice viewer and 3-D volume rendering for NIfTI and DICOM images.

EEG

MNE-PythonMNE developers, open source
EEG and MEG analysis: preprocessing, time-frequency and source localisation.
EEGLABSCCN, University of California San Diego
A MATLAB toolbox for EEG processing, including independent component analysis for artifact removal.

Literature search

Semantic ScholarAllen Institute for AI
Free AI-assisted search across scientific papers, with one-line paper summaries.
ElicitElicit
Finds papers and pulls study details into tables for evidence reviews.
ConsensusConsensus
Answers research questions with summaries drawn from peer-reviewed papers.

Outside tools are listed for information only. We are not affiliated with them and do not endorse them; names belong to their owners. Check each tool’s licence and intended use: most are research software, not medical devices.